cathpy.core.error¶
from cathpy.core import error as err
raise err.OutOfBoundsError('error message')
CATH exception classes
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exception
cathpy.core.error.
DuplicateSequenceError
¶ More than one sequence in an alignment has the same id
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exception
cathpy.core.error.
FileEmptyError
¶ File is empty.
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exception
cathpy.core.error.
GapError
¶ Exception raised when trying to find residue information about a gap position.
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exception
cathpy.core.error.
GeneralError
¶ General Exception class within the cathpy package.
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exception
cathpy.core.error.
HttpError
¶ Problem getting/sending data over HTTP
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exception
cathpy.core.error.
InvalidInputError
¶ Exception raised when an error is encountered due to incorrect input.
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exception
cathpy.core.error.
JsonError
¶ Problem parsing JSON
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exception
cathpy.core.error.
MergeCheckError
¶ Exception raised when an error is encountered when checking the merge.
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exception
cathpy.core.error.
MergeCorrespondenceError
(*, seq_id, aln_type, seq_type, ref_no_gaps, corr_no_gaps)¶ Exception raised when failing to match correspondence sequences during alignment merge.
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exception
cathpy.core.error.
MissingExecutableError
¶ Missing an external executable.
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exception
cathpy.core.error.
MissingGroupsimError
¶ Failed to find groupsim executable
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exception
cathpy.core.error.
MissingLockError
¶ Missing a lock object.
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exception
cathpy.core.error.
MissingScoreconsError
¶ Failed to find scorecons executable
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exception
cathpy.core.error.
MissingSegmentsError
¶ Exception raised when segment information is missing.
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exception
cathpy.core.error.
NoMatchesError
¶ No matches.
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exception
cathpy.core.error.
OutOfBoundsError
¶ Exception raised when code has moved outside expected boundaries.
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exception
cathpy.core.error.
ParamError
¶ Incorrect parameters.
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exception
cathpy.core.error.
ParseError
¶ Failed to parse information.
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exception
cathpy.core.error.
SeqIOError
¶ General Exception class within the SeqIO module
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exception
cathpy.core.error.
TooManyMatchesError
¶ Found more matches than expected.